Installation

From Napari interface

EpiCure is a Napari plugin, in python. You can install it either through an already installed Napari instance by going in Napari to Plugins>Install/Uninstall, search for Epicure and click Install. You could have version issues between the different modules installed in your environment and EpiCure dependencies, in this case it is recommended to create a new virtual environnement specific for EpiCure.

From virtual environnement

To install EpiCure in a new environnement, you should create a new virtual environnement or activate an exisiting compatible one.

Create a new virtual environement

You can create a virtual environement with venv or anaconda (you may need to install anaconda, see here: on windows, on macOS or on linux ).

Then use the Anaconda interface to create a new virtual environement with the desired python version, or through the Terminal.

For example, in a terminal, once conda is installed, you can create a new environnement by typing:

conda create -n epicurenv python=3.10

Install EpiCure

Once you have created/identified a virtual environnement, type in the terminal:

conda activate epicurenv

to activate it (and start working in that environnement).

Type in the activated environnement window:

pip install epicure 

to install EpiCure with its dependencies.

Compatibility/Dependencies